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Boutique Hotels in San Francisco: Ten of the Best in the City
By: Jill Loeffler • Updated: June 25, 2025
Staying at one of the boutique hotels in San Francisco is a great SF lodging alternative. Here you will find 10 of the best options, from bed and breakfasts to small, personalized hotels.
Many of the recommendations on this list are in local neighborhoods yet still close to the main SF attractions and activities. Staying at a boutique hotel in San Francisco is the perfect way to get an authentic SF experience.
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Top 5 Boutique Hotels in SF
You'll find my top five picks tucked into beautiful neighborhoods around town, each offering their own unique amenities.
1. Inn at the Presidio
Address: 42 Moraga Avenue
Neighborhood: Presidio
Nightly Rates: From around $400 - $580
Number of Rooms: 22
This newly opened inn is situated inside the San Francisco Presidio, a National Historic Landmark full of scenic walking trails. You will find large, quiet rooms in remodeled army officers' quarters here.
Of the 22 rooms, 17 are suites with a gas fireplace and a sofa sleeper. The hotel also features an outdoor patio with a gas fire pit, porches with rocking chairs, and large public lobbies.
Amenities here include:
- Free Wi-Fi throughout the hotel
- Complimentary continental breakfast
- Daily morning newspaper
- Affordable and convenient parking (around $13 per night)
- Afternoon wine and cheese receptions
- Pet friendly ($40 fee)
The hotel also provides free shuttles to get around the Presidio (which contains attractions like the Disney Museum, Officer's Club, and more), as well as to and from the Golden Gate Bridge and downtown.
You can also take a pleasant walk or public transportation from the hotel to get to Baker Beach, Crissy Field, Fisherman's Wharf, Union Square, and other popular areas.
>> Compare online prices and read recent guest reviews for the Inn at the Presidio on TripAdvisor
2. Union Street Inn
Address: 2229 Union Street
Neighborhood: Marina District
Nightly Rates: Range from $297 - $369
Number of Rooms: 6
The most requested boutique hotel in San Francisco is the Union Street Inn, which offers a quaint, romantic stay with charming Eduardian decor and antique touches.
This small bed and breakfast is located on Union Street, where you will find many cute shops, restaurants, and wine bars.
It's about a 15-minute walk to Fisherman's Wharf, a 10-minute walk to the Presidio, and only about a 10-minute walk to the waterfront. This neighborhood also has good public transportation, so you can easily take the bus to see other key neighborhoods and top sights.
Guests absolutely love the charm, hospitality, and pampering touches, like fresh fruit and chocolates in the rooms and wine and cheese receptions every afternoon.
Here are some of the additional amenities at the Union Street Inn:
- Complimentary daily breakfast and wine and cheese reception
- Free high-speed internet and cable TV
- High-quality linens and toiletries
- Air conditioning
- Quaint backyard garden
- Bridal suite
>> Read what other travelers have to say about the Union Street Inn and find booking details on TripAdvisor. Note: You will have to call the Union Street Inn to book rooms because they are so limited.
3. Queen Anne Hotel
Address: 1590 Sutter Street
Neighborhood: Pacific Heights/Japantown
Nightly Rates: From $189 - $489
Number of Rooms: 48
The Queen Anne Hotel is one of the larger boutique hotels in San Francisco.
Set in the beautiful Pacific Heights neighborhood, this historic, Victorian-style building that dates back to 1890 sits proudly on the corner of Sutter and Octavia.
Inside, you'll find charming accommodations with stained glass windows and antiques throughout.
Each room is individually decorated with Victorian pieces, which adds to the hotel's character. Some rooms have fireplaces and jacuzzi tubs.
Amenities at the Queen Anne Hotel include:
- Daily complimentary breakfast and afternoon tea and sherry
- Free wireless internet access
- Business center
- Outdoor courtyard
- Cable/satellite TVs
- Room service
- Dry cleaning and laundry service
- Limo or town car service for a small fee
- Discounted access to three health clubs within a few blocks of the hotel
4. Inn San Francisco
Address: 943 South Van Ness Avenue
Neighborhood: Mission District
Nightly Rates: Range from $235 - $415
Number of Rooms: 21
Another exciting option for boutique hotels in San Francisco is Inn San Francisco in the Mission District. This small bed and breakfast is warm and inviting.
You are sure to feel at home with a quiet outdoor garden, a gorgeous rooftop terrace, and cozy fireplaces. You will also be close to some of the best restaurants and bars in the city.
Other amenities at this bed and breakfast include:
- Free breakfast buffet
- Free high-speed internet
- Hot tub in the garden
- Panoramic views from the rooftop
- Shared or private bathrooms available
- Individually decorated rooms, two with a fireplace
- Refrigerator and TV in room
- Pet-friendly
If you are a light sleeper, make sure you check the noise level of your room before booking. Some rooms are just steps off noisy Van Ness Avenue, but there are also several quieter options in the back.
>> Find more tips from recent guests and compare prices for Inn San Francisco on TripAdvisor
5. The Parsonage
Address: 198 Haight Street
Neighborhood: Civic Center/Hayes Valley
Nightly Rates: From about $260 - $368
Number of Rooms: 5
Another one of my favorite boutique hotels in San Francisco is The Parsonage.
This bed and breakfast is located in one of the hottest San Francisco neighborhoods, where new bars and restaurants are opening up daily. You are also within walking distance of San Francisco's subway system, BART.
Rooms at The Parsonage are comfortable and quiet. The owners take great care of both their property and their guests, so you will surely have a great experience here.
Amenities at The Parsonage include:
- Amazing multi-course seasonal complimentary breakfast
- Free high-speed internet access
- Queen beds with superior linens
- Marble showers and towel warmers
- Fireplaces and/or views from all the rooms
- Powered 100% by renewable electricity
>> Read recent guest reviews for The Parsonage on TripAdvisor. Note: They require a two-night minimum stay.
More Great Boutique Hotels in SF
For even more variety, check out these additional options in the city.
6. Parker Guest House
520 Church Street, Castro
- Cute bed and breakfast located between the Castro and Mission neighborhoods
- Free breakfast and evening wine social
- Library, garden and sun terrace, free Wi-Fi, luxury bath amenities, and personalized service
- 21 rooms
- Rooms start at around $230 - $320 a night
>> Find out more about the Parker Guest House and rooms
7. The Metro Hotel
319 Divisadero Street, Alamo Square neighborhood
- Central location near the Haight-Ashbury District and Golden Gate Park
- Free high-speed internet access
- Beautiful private garden courtyard only for hotel guests
- 24 rooms
- Rooms from $194 - 280 a night
>> Get the best deals for your stay at the Metro Hotel
8. Golden Gate Hotel
775 Bush Street, Union Square district
- Charming, centrally located bed and breakfast with antique décor
- Resident cat, Skittles, roaming freely around the hotel
- Complimentary hot breakfast buffet at sister property (1 minute away)
- Both private and shared baths available
- Dog-friendly (with a nightly fee)
- 23 rooms
- Rooms for about $119 - $271 a night
>> Learn about the Golden Gate Hotel and find your choice of rooms
9. Orchard Garden Hotel
466 Bust Street, Chinatown
- Rooftop garden and patio
- Free Wi-Fi, cardio room, and business center
- Eco-friendly facilities and organic bath products
- On-site American restaurant serving breakfast daily
- 44 elegant and modern rooms with smart TVs
- Rooms from $159 - 249 a night
>> Discover more about the Orchard Garden Hotel on Booking.com
10. Hotel Castro
4230 18th Street, Castro District
- Contemporary furnishings, bold artwork, and floor-to-ceiling windows
- On-site Lobby Bar lounge serving craft cocktails
- Keyless check-in/check-out and app-driven communication with a private concierge
- 12 vibrant rooms with unique décor and private outdoor terraces
- Rooms for $209 -369 per night
>> Find out more and check availability at the Hotel Castro
Find the best deal, compare prices, and read what other travelers have to say about these and other boutique hotels in San Francisco on TripAdvisor.
Other SF Hotel Options
Booking: Find great deals all around San Francisco for your upcoming stay!
TripAdvisor: What's the #1 hotel in San Francisco? Read reviews & find hotel deals on TripAdvisor!
VRBO: Besides hotels, you'll also find some great places to stay locally through VRBO. Book an apartment or a room and feel more like a local. Find some great places to stay on VRBO here.
Hi, I'm Jill!
Dreaming of a San Francisco vacation? As a proud local, I'm here to share my insider tips and personal experiences to help you make the most of this iconic city!
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